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NAM (version 1.0.2.2)

Nested Association Mapping analysis

Description

Package designed for association studies in nested association mapping (NAM) panels, but it also can handle biparental and random populations. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML.

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Version

Install

install.packages('NAM')

Monthly Downloads

409

Version

1.0.2.2

License

GPL-3

Maintainer

Alencar Xavier

Last Published

February 3rd, 2015

Functions in NAM (1.0.2.2)

gwas

Empirical Bayes Genome Wide Association Mapping
NAM-package

Nested Association Mapping analysis
REML

Restricted Maximum Likelihood
blup

Best Linear Unbiased Predictor
Internals

Internal functions
tpod

Tetra-seed Pods
reference

Changing the Reference Genotype
manhattan

Plotting Genome-Wide Association Study
snpQC

SNP Quality Control
Fst

Fixation Index