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NAM (version 1.1.2)

Nested Association Mapping Analysis

Description

Designed for association studies in nested association mapping (NAM) panels, but also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML and Gibbs sampling.

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Version

Install

install.packages('NAM')

Monthly Downloads

409

Version

1.1.2

License

GPL-3

Maintainer

Alencar Xavier

Last Published

April 1st, 2015

Functions in NAM (1.1.2)

Fst

Fixation Index
SNP h2

SNP heritability
Reference

Changing the Reference Genotype
GWAS

Empirical Bayes Genome Wide Association Mapping
SNP QC

SNP Quality Control
Dataset

Tetra-seed Pods
NAM-package

Nested Association Mapping Analysis
Manhattan Plot

Plotting Genome-Wide Association Study
REML

Restricted Maximum Likelihood
Internals

Internal functions
BGS

Bayesian Gibbs Sampler
snpQC

SNP Quality Control
manhattan

Plotting Genome-Wide Association Study
snpH2

SNP heritability
Bayesian Gibbs Sampler

Bayesian Gibbs Sampler
tpod

Tetra-seed Pods