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NAM (version 1.8.0)

Nested Association Mapping

Description

Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) . It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.

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Version

Install

install.packages('NAM')

Monthly Downloads

489

Version

1.8.0

License

GPL-3

Maintainer

Alencar Xavier

Last Published

January 24th, 2026

Functions in NAM (1.8.0)

SNP QC

SNP Quality Control
Dataset 2

Multi-environmental trial
FST

Fixation Index
MLM Gibbs

Bayesian Mixed Model
Dataset 1

Tetra-seed Pods
GWP

Genome-wide prediction
Optimizations

Internal functions
GWAS

Empirical Bayes Genome Wide Association Mapping
MLM Trials

Genomic mixed model
NAM-package

Nested Association Mapping
Manhattan

Manhattan plot for Association Studies
SNP H2

SNP heritability
MLM REML

Restricted Maximum Likelihood
MLM MV-PEGS

Pseudo-Expectation Gauss-Seidel for Multivariate Models