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NBPSeq (version 0.1.6)

Negative Binomial Models for RNA-Sequencing Data

Description

Negative Binomial (NB) models for two-group comparisons and regression inferences from RNA-Sequencing Data.

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Version

Install

install.packages('NBPSeq')

Monthly Downloads

369

Version

0.1.6

License

GPL-2

Maintainer

Yanming Di

Last Published

May 26th, 2012

Functions in NBPSeq (0.1.6)

prepare.nbp

Prepare the Data Structure for NBP Test
nbp.test

NBP Test for Differential Gene Expression from RNA-Seq Counts
test.coefficient

Large-sample Test for a Regression Coefficient in an Negative Binomial Regression Model
estimate.dispersion

Estimate Negative Binomial Dispersion
print.nbp

Print Contents of an NBP Object
prepare.nb.data

Prepare the NB Data Structure for RNA-Seq Read Counts
plot.nbp

Diagnostic Plots for an NBP Object
exact.nb.test

Exact Negative Binomial Test for Differential Gene Expression
nb.glm.test

Fit Negative Binomial Regression Model and Test for a Regression Coefficient
arab

Arabidopsis RNA-Seq Data Set
estimate.disp

Estimate Negative Binomial Dispersion Parameters
estimate.norm.factors

Estiamte Normalization Factors