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NBPSeq (version 0.1.8)
Negative Binomial Models for RNA-Sequencing Data
Description
Negative Binomial (NB) models for two-group comparisons and regression inferences from RNA-Sequencing Data.
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Install
install.packages('NBPSeq')
Monthly Downloads
408
Version
0.1.8
License
GPL-2
Maintainer
Yanming Di
Last Published
November 19th, 2012
Functions in NBPSeq (0.1.8)
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prepare.nbp
Prepare the Data Structure for NBP Test
estimate.norm.factors
Estiamte Normalization Factors
print.nbp
Print Contents of an NBP Object
prepare.nb.data
Prepare the NB Data Structure for RNA-Seq Read Counts
nbp.test
NBP Test for Differential Gene Expression from RNA-Seq Counts
estimate.disp
Estimate Negative Binomial Dispersion Parameters
plot.nbp
Diagnostic Plots for an NBP Object
arab
Arabidopsis RNA-Seq Data Set
nb.glm.test
Fit Negative Binomial Regression Model and Test for a Regression Coefficient
estimate.dispersion
Estimate Negative Binomial Dispersion
test.coefficient
Large-sample Test for a Regression Coefficient in an Negative Binomial Regression Model
exact.nb.test
Exact Negative Binomial Test for Differential Gene Expression