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NBPSeq (version 0.1.8)

Negative Binomial Models for RNA-Sequencing Data

Description

Negative Binomial (NB) models for two-group comparisons and regression inferences from RNA-Sequencing Data.

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Version

Install

install.packages('NBPSeq')

Monthly Downloads

369

Version

0.1.8

License

GPL-2

Maintainer

Yanming Di

Last Published

November 19th, 2012

Functions in NBPSeq (0.1.8)

prepare.nbp

Prepare the Data Structure for NBP Test
estimate.norm.factors

Estiamte Normalization Factors
print.nbp

Print Contents of an NBP Object
prepare.nb.data

Prepare the NB Data Structure for RNA-Seq Read Counts
nbp.test

NBP Test for Differential Gene Expression from RNA-Seq Counts
estimate.disp

Estimate Negative Binomial Dispersion Parameters
plot.nbp

Diagnostic Plots for an NBP Object
arab

Arabidopsis RNA-Seq Data Set
nb.glm.test

Fit Negative Binomial Regression Model and Test for a Regression Coefficient
estimate.dispersion

Estimate Negative Binomial Dispersion
test.coefficient

Large-sample Test for a Regression Coefficient in an Negative Binomial Regression Model
exact.nb.test

Exact Negative Binomial Test for Differential Gene Expression