char2int

the global network object, pre-created using <code><a rd-options="" href="/link/import.net?package=NEArender&version=1.0" data-mini-rdoc="NEArender::import.net">import.net</a></code>

net.list

AGS or FGS object that lists members of each individual AGS/FGS, pre-created using <code><a rd-options="" href="/link/samples2ags?package=NEArender&version=1.0" data-mini-rdoc="NEArender::samples2ags">samples2ags</a></code>

gs.list.1

FGS or AGS object that lists members of each individual FGS/AGS, pre-created using <code><a rd-options="" href="/link/samples2ags?package=NEArender&version=1.0" data-mini-rdoc="NEArender::samples2ags">samples2ags</a></code>

gs.list.2


This function reads input list objects and maps unique numbers to each member in the network/ genesets.


internal

Performs network enrichment analysis against functional gene sets.
Benchmarks networks. Renders raw gene profile matrices of dimensionality "Ngenes
x Nsamples" into the space of gene set (typically pathway) enrichment scores of
dimensionality "Npathways x Nsamples".

char2int: char2int function

Description

Usage

Arguments

See Also