NEArender (version 1.4)

save_gs_list: Create a TAB-delimited text file from AGS or FGS

Description

Each line in this file represents one gene/protein from an AGS/FGS and is accompanied with respective AGS/FGS ID. This format can be used e.g. as input at web site EviNet https://www.evinet.org/

Usage

save_gs_list(gs.list, File = "gs.list.groups")

Arguments

gs.list

a list created with samples2ags, mutations2ags, as_genes_fgs, or import.gs.

File

output file name.

References

http://www.biomedcentral.com/1471-2105/13/226

https://www.evinet.org/

See Also

samples2ags, mutations2ags, as_genes_fgs, import.gs

Examples

data(net.kegg)
netpath <- net.kegg
net <- import.net(netpath);
fgs.genes <- as_genes_fgs(net);
save_gs_list(fgs.genes, File = "single_gene_ags.groups.tsv");