tcga.gbm


TCGA point mutations from the glioblastoma multiforme cohort


datasets

Performs network enrichment analysis against functional gene sets.
Benchmarks networks. Renders raw gene profile matrices of dimensionality 'Ngenes
x Nsamples' into the space of gene set (typically pathway) enrichment scores of
dimensionality 'Npathways x Nsamples'.

Ashwini Jeggari

NEArender

Network Enrichment Analysis

tcga.gbm function

A matrix  with genes as rows (9660 genes with mutations reported in at least one sample) and TCGA samples as columns (291 samples). Wild type (=reference) states are denoted with NA.

tcga.gbm: NEArender

Description

Usage

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Examples