ingest_data

Opens and stacks isotope ratio and water/carbon dioxide mole fraction
variables from monthly HDF5 files. If a new enough version of <code>neonUtilities</code>
is available, this function will try to use <code>fasttime</code> in order to accelerate
data stacking.

Functions for downloading,
calibrating, and analyzing atmospheric isotope data bundled
into the eddy covariance data products of the National Ecological
Observatory Network (NEON) <https://www.neonscience.org>.
Calibration tools are provided for carbon and water isotope products.
Carbon isotope calibration details are found in Fiorella et al. (2021)
<doi:10.1029/2020JG005862>, and the readme
file at <https://github.com/lanl/NEONiso>. Tools for calibrating water
isotope products have been added as of 0.6.0, but have known deficiencies
and should be considered experimental and unsupported.

Rich Fiorella

NEONiso

Tools to Calibrate and Work with NEON Atmospheric Isotope Data

ingest_data function

<dl><dt>inname</dt>
<dd>A file (or list of files) to extract data from for calibration.</dd>
<dt>analyte</dt>
<dd>Carbon (Co2) or water (H2o)?</dd>
<dt>name_fix</dt>
<dd>Fix to data frame required for next-generation calibration
functions, but breaks old 'by_month()' functions. This
parameter provides a necessary work around until these
functions are removed.</dd>
<dt>amb_avg</dt>
<dd>The averaging interval of the ambient data to extract.</dd>
<dt>ref_avg</dt>
<dd>The averaging interval of the reference data to extract.</dd></dl>

Arguments

Rich Fiorella <a href="/link/rfiorella%40lanl.gov?package=NEONiso&version=0.7.2" data-mini-rdoc="NEONiso::rfiorella@lanl.gov">rfiorella@lanl.gov</a>

Author

Ingest and stack variables needed in calibration. — ingest_data

<dl>

<dt>inname</dt>
<dd>A file (or list of files) to extract data from for calibration.</dd>


<dt>analyte</dt>
<dd>Carbon (Co2) or water (H2o)?</dd>


<dt>name_fix</dt>
<dd>Fix to data frame required for next-generation calibration
functions, but breaks old 'by_month()' functions. This
parameter provides a necessary work around until these
functions are removed.</dd>


<dt>amb_avg</dt>
<dd>The averaging interval of the ambient data to extract.</dd>


<dt>ref_avg</dt>
<dd>The averaging interval of the reference data to extract.</dd>

</dl>

Rich Fiorella <a href='mailto:rfiorella@lanl.gov'>rfiorella@lanl.gov</a>

ingest_data: Ingest and stack variables needed in calibration.

Description

Usage

Value

Arguments

Author