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NEpiC (version 1.0.1)

Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals

Description

Package for a Network assisted algorithm for Epigenetic studies using mean and variance Combined signals: NEpiC. NEpiC combines both signals in mean and variance differences in methylation level between case and control groups searching for differentially methylated sub-networks (modules) using the protein-protein interaction network.

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Version

Install

install.packages('NEpiC')

Monthly Downloads

158

Version

1.0.1

License

GPL-2

Maintainer

Peifeng Ruan

Last Published

March 26th, 2016

Functions in NEpiC (1.0.1)

c_dms

Combined signals dense modules searching algorithm.
c_score

Computing the mean and variance combined signal scores
candidate_genes

Chosing candidate genes.
permutation

Validating identified modules using permutations