NGLVieweR (version 1.4.0)

setSuperpose: Set superpose

Description

Enable or disable superposition of multiple structures, with options to specify the reference structure and selection strings for alignment.

Usage

setSuperpose(
  NGLVieweR,
  reference = 1,
  sele_reference,
  sele_target,
  superpose = TRUE
)

Value

Sets the superpose list in the NGLVieweR

htmlwidgets

object.

Arguments

NGLVieweR

A NGLVieweR object.

reference

The index of the reference structure to align other structures to. Defaults to 1 (the first loaded structure).

sele_reference

Selection string for the reference structure, specifying which parts to align. Mandatory.

sele_target

Selection string for each target structure, specifying which parts to align. Mandatory.

superpose

Logical; if TRUE (default), enable superposition of multiple structures. Set to FALSE to disable.

Examples

NGLVieweR("1GZM") %>%
  addRepresentation("cartoon", param = list(color = "blue")) %>%
  addStructure("1U19") %>%
  addRepresentation("cartoon", param = list(color = "orange")) %>%
  setSuperpose(
    reference = 1, 
    sele_reference = ":A", 
    sele_target = ":A", 
    superpose = TRUE
  )