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NGScopy (version 1.6.0)

NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing

Description

NGScopy provides a quantitative caller for detecting copy number variations in next generation sequencing (NGS), including whole genome sequencing (WGS), whole exome sequencing (WES) and targeted panel sequencing (TPS). The caller can be parallelized by chromosomes to use multiple processors/cores on one computer.

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Version

Version

1.6.0

License

GPL (>=2)

Maintainer

Xiaobei Zhao

Last Published

February 15th, 2017

Functions in NGScopy (1.6.0)

NGScopy-package

NGScopy: Detection of copy number variations in next generation sequencing
ngscopy_unittest

A wrapper to run unit testing of NGScopy
parse_segmtype

Parse the type of segmentation
read_regions

Read regions from a data.frame, a file or a connection.
help_segmtype

Get help for segmentation functions
NGScopy-class

Detection of copy number variations in next generation sequencing (NGS)
df.to.gr

Convert a data.frame to a GRanges object
ngscopy_cmdline_example

Run an example of NGScopy at UNIX-like command line