herbIngredient

The second version of the TCMID database was used as one of the large datasets in the TCM herb field. TCMID includes additional ingredient-specific experimental data based on herbal mass spectrometry spectra. The herb and ingredient associations from this database are provided here.

datasets

Functions for nominal data mining based on bipartite graphs, which build a pipeline for analysis and missing values imputation. Methods are mainly from the paper: Jafari, Mohieddin, et al. (2021) <doi:10.1101/2021.03.18.436040>, some new ones are also included.

Mohieddin Jafari

NIMAA

Nominal Data Mining Analysis

Cheng Chen

herbIngredient function

A tibble with two variables:<dl class="dl-horizontal">
<dt><code>herb</code></dt><dd>Scientific Latin names of available herbs in TCM database</dd>
<dt><code>pubchem_id</code></dt><dd>unique compound id (CID) of ingredients based on PubChem database for available <code>herb</code> in TCMID database</dd>
</dl>

Format

herbIngredient — herbIngredient

A tibble with two variables:<dl class='dl-horizontal'>
<dt><code>herb</code></dt><dd>Scientific Latin names of available herbs in TCM database</dd>
<dt><code>pubchem_id</code></dt><dd>unique compound id (CID) of ingredients based on PubChem database for available <code>herb</code> in TCMID database</dd>
</dl>

herbIngredient: herbIngredient

Description

Usage

Arguments

Format