metaHeatmap

metaHeatmap,matrix-method

metaHeatmap-methods

metaHeatmap,NMFfitX-method

metaHeatmap,NMF-method

NMF-defunct

object

Defunct Functions and Classes in the NMF Package

methods

Provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published algorithms
and seeding methods, and provides a framework to test, develop and plug
new/custom algorithms. Most of the built-in algorithms have been optimized
in C++, and the main interface function provides an easy way of performing
parallel computations on multicore machines.

Nicolas Sauwen

Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)

NMF-defunct function

<dl> <dt>object</dt>
<dd>an R object</dd>
 <dt>...</dt>
<dd>other arguments</dd></dl>

Arguments

<dl> <dt>metaHeatmap</dt>
<dd><code>signature(object = "matrix")</code>:
 Defunct method substituted by <code>aheatmap</code>.</dd>
 <dt>metaHeatmap</dt>
<dd><code>signature(object = "NMF")</code>:
 Deprecated method that is substituted by
 <code>coefmap</code> and <code>basismap</code>.</dd>
 <dt>metaHeatmap</dt>
<dd><code>signature(object = "NMFfitX")</code>:
 Deprecated method subsituted by
 <code>consensusmap</code>.</dd>
 
</dl>

Methods

Defunct Functions and Classes in the NMF Package — NMF-defunct

<dl>

 <dt>object</dt>
<dd>an R object</dd>


 <dt>...</dt>
<dd>other arguments</dd>

</dl>

<dl>

 <dt>metaHeatmap</dt>
<dd><code>signature(object = "matrix")</code>:
 Defunct method substituted by <code>aheatmap</code>.</dd>


 <dt>metaHeatmap</dt>
<dd><code>signature(object = "NMF")</code>:
 Deprecated method that is substituted by
 <code>coefmap</code> and <code>basismap</code>.</dd>


 <dt>metaHeatmap</dt>
<dd><code>signature(object = "NMFfitX")</code>:
 Deprecated method subsituted by
 <code>consensusmap</code>.</dd>


 
</dl>

NMF-defunct: Defunct Functions and Classes in the NMF Package

Description

Usage

Arguments

Methods