NMsim (version 0.1.3)

NMcreateDoses: Easily generate dosing records

Description

Combinations of different columns can be generated. Columns will be extended by repeating last value of the column if needed in order to match length of other columns.

Usage

NMcreateDoses(
  TIME,
  AMT = NULL,
  RATE = NULL,
  SS = NULL,
  CMT = 1,
  EVID = 1,
  addl = NULL,
  as.fun
)

Value

A data.frame with dosing events

Arguments

TIME

The time of the dosing events

AMT

vector or dataa.frame with amounts amount

RATE

Optional infusion rate

SS

Optional steady-state flag

CMT

Compartment number. Default is to dose into CMT=1.

EVID

The event ID to use for doses. Default is to use EVID=1, but EVID might also be wanted.

addl

Optinal. A list of ADDL and II that will be applied to last dose

as.fun

The default is to return data as a data.frame. Pass a function (say `tibble::as_tibble`) in as.fun to convert to something else. If data.tables are wanted, use as.fun="data.table". The default can be configured using NMdataConf.

Details

Experimental. Please check output before use. AMT, RATE, SS, II, CMT are vectors of length 1 or longer. Those not of max length 1 are repeated. If TIME is longer than those, they are extended to match length of TIME. Allowed combinations of AMT, RATE, SS, II here: https://ascpt.onlinelibrary.wiley.com/doi/10.1002/psp4.12404

Examples

library(data.table)
## Users should not use setDTthreads. This is for CRAN to only use 1 core.
data.table::setDTthreads(1) 
## arguments are expanded - makes loading easy
NMcreateDoses(TIME=c(0,12,24,36),AMT=c(2,1))
## Different doses by covariate
NMcreateDoses(TIME=c(0,12,24),AMT=data.table(AMT=c(2,1,4,2),DOSE=c(1,2)))
## Make Nonmem repeat the last dose. This is a total of 20 dosing events.
NMcreateDoses(TIME=c(0,12),AMT=c(2,1),addl=list(ADDL=c(NA,9*2),II=c(NA,12)))
dt.amt <- data.table(DOSE=c(100,400))
dt.amt[,AMT:=DOSE*1000]
dt.amt
doses.sd <- NMcreateDoses(TIME=0,AMT=dt.amt)
doses.sd$dose <- paste(doses.sd$DOSE,"mg")
doses.sd$regimen <- "SD"
doses.sd

### multiple dose regimens with loading are easily created with NMcreateDoses too
## Specifying the time points explicitly
dt.amt <- data.table(AMT=c(200,100,800,400)*1000,DOSE=c(100,100,400,400))
doses.md.1 <- NMcreateDoses(TIME=seq(0,by=24,length.out=7),AMT=dt.amt)
doses.md.1$dose <- paste(doses.md.1$DOSE,"mg")
doses.md.1$regimen <- "QD"
doses.md.1
## or using ADDL+II
dt.amt <- data.table(AMT=c(200,100,800,400)*1000,DOSE=c(100,100,400,400))
doses.md.2 <- NMcreateDoses(TIME=c(0,24),AMT=dt.amt,addl=data.table(ADDL=c(0,5),II=c(0,24)))
doses.md.2$dose <- paste(doses.md.2$DOSE,"mg")
doses.md.2$regimen <- "QD"
doses.md.2