NOISeq (version 2.16.0)

Exploratory_Plots: Exploratory plots for expression data.

Description

Standard generic function. Different types of plots showing the biological classification for detected features, the expression distribution across samples or biological groups, the detection of technical bias such as length, GCcontent or RNA composition, the dependence of expression on sequencing depth, etc.

Usage

explo.plot(object, ...)

Arguments

object

Object generated with dat() function.

...

Any argument from par.

Value

The explo.plot() function takes the object generated by dat() and draws the corresponding plot.

See Also

Biodetection,CD,CountsBio,GCbias,lengthbias,Saturation, readData, addData, dat.

Examples

## Load the input object with the expression data and the annotations
data(myCounts)

## Generating data for the plot "biodetection" and samples in columns 3 and 4 of expression data
mydata2plot = dat(mydata, type = "biodetection", k = 0)

## Generating the corresponding plot
explo.plot(mydata2plot)