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NanoStringNorm (version 1.0.11)

Normalize NanoString miRNA and mRNA data

Description

The function is used to Normalize Nanostring data

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Version

Install

install.packages('NanoStringNorm')

Monthly Downloads

12

Version

1.0.11

License

GPL-2

Maintainer

Daryl Waggott

Last Published

January 27th, 2012

Functions in NanoStringNorm (1.0.11)

probe.correction.factor.normalization

probe.correction.factor.normalization
get.mean.sd.and.cv

get.mean.sd.and.cv
get.trait.summary.stats

get.trait.summary.stats
get.sample.summary.stats

get.sample.summary.stats
NanoString.mRNA

A data.frame consisting of Nanostring Rat RNA expression values. The data were exported as a tab delimited file from the XLS results.
get.gene.summary.stats

get.gene.summary.stats
get.batch.effects

get.batch.effects
code.count.normalization

code.count.normalization
NanoStringNorm

NanoStringNorm
NanoStringNorm-package

A set of functions for Normalization of Nanostring miRNA and RNA expression levels. Currently, only one function "NanoStringNorm" is used for all combinations of Normalization.
sample.content.normalization

sample.content.normalization
NanoString

An rda file storing NanoString example datasets. Currently, a data.frame consisting of Nanostring Rat RNA expression values. The data were exported as a tab delimited file from the XLS results.
get.geo.mean

get.geo.mean
output.formatting

output.formatting
background.normalization

background.normalization
read.xls.RCC

read.xls.RCC
other.normalization

other.normalization
predict.concentration

predict.concentration
get.beta.se.and.p

get.beta.se.and.p
get.ttest.and.foldchange

get.ttest.and.foldchange
Plot.NanoStringNorm

Plot.NanoStringNorm