NanoStringNorm (version 1.1.13)

read.markup.RCC: read.markup.RCC

Description

A function to read and merge a set of sample specific RCC markup files.

Usage

read.markup.RCC(rcc.path = ".", rcc.pattern = "*.RCC|*.rcc", exclude = NULL, include = NULL)

Arguments

rcc.path

The directory of the rcc files. Defaults to current working directory.

rcc.pattern

The file pattern used to search for the RCC files. Defaults to the RCC extension

exclude

A list of files to ignore

include

A list of files to include

Value

• Returns a list with two components. The first is the header information which contains sample IDs and diagnostic information on the quality of the samples. The second is the count data and can be directly used in the input to NanoStringNorm.

Examples

# read in all the rcc files in the current directory 
# data.raw <- read.markup.RCC();
# data.norm <- NanoStringNorm(data.raw);