addCodesetAnnotation

addCodesetAnnotation,RccSet-method

rccSet

Data frame containing the codeset annotation.

annot

Logical indicating whether the probes should be reordered
according to their barcodes (this can help in identifying
barcode-specific artifacts -- i.e. background noise).

reorder

Logical indicating whether or not warnings should be shown, if any.

showWarnings


Returns a copy of the input RccSet where the codeset annotation
                has been merged into its fData slot. The merge key for each is a string
                formed from the concatenation of their CodeClass, GeneName, and
                Accession columns ("<codeclass>_<genename>_<accession>"). For creating
                the codeset annotation object, see buildCodesetAnnotation().
</accession></genename></codeclass>

NanoStringQCPro provides a set of quality metrics that can
be used to assess the quality of NanoString mRNA gene
expression data -- i.e. to identify outlier probes and outlier
samples. It also provides different background subtraction and
normalization approaches for this data. It outputs suggestions
for flagging samples/probes and an easily sharable html quality
control output.

Robert Ziman

NanoStringQCPro

Quality metrics and data processing methods for NanoString mRNA
gene expression data

addCodesetAnnotation,RccSet-method function

Returns a copy of the input RccSet where the codeset annotation
                has been merged into its fData slot. The merge key for each is a string
                formed from the concatenation of their CodeClass, GeneName, and
                Accession columns ("<CodeClass>_<GeneName>_<Accession>"). For creating
                the codeset annotation object, see buildCodesetAnnotation().

addCodesetAnnotation,RccSet-method: Add NanoString codeset annotation to an RccSet

Description

Usage

Arguments

Value

Examples