addQCFlags

addQCFlags,RccSet-method

rccSet

Path to a sample QC flag file as generated by the
                    NanoStringQCPro QC report (see makeQCReport())

flagFile


Returns a copy of the input RccSet with columns added to pData
                from the provided sample QC flag annotation file. (That file is
                produced by makeQCReport(); see its help page for more
                details.)


NanoStringQCPro provides a set of quality metrics that can
be used to assess the quality of NanoString mRNA gene
expression data -- i.e. to identify outlier probes and outlier
samples. It also provides different background subtraction and
normalization approaches for this data. It outputs suggestions
for flagging samples/probes and an easily sharable html quality
control output.

Robert Ziman

NanoStringQCPro

Quality metrics and data processing methods for NanoString mRNA
gene expression data

addQCFlags,RccSet-method function

Returns a copy of the input RccSet with columns added to pData
                from the provided sample QC flag annotation file. (That file is
                produced by makeQCReport(); see its help page for more
                details.)

addQCFlags,RccSet-method: Add sample QC flags to an rccSet

Description

Usage

Arguments

Value