allSumPlot

allSumPlot,RccSet-method

rccSet

Character string specifying the method for outlier detection: either
"cutoffByMMAD" or "cutoffByVar".

method

Numeric value passed to the cutoff function specified by the method
argument (see the 'd' argument of cutoffByMMAD and cutoffByVar).

stringency


Plot the sum of all counts (endogenous and housekeeping genes only) for each
sample in an RccSet object.


NanoStringQCPro provides a set of quality metrics that can
be used to assess the quality of NanoString mRNA gene
expression data -- i.e. to identify outlier probes and outlier
samples. It also provides different background subtraction and
normalization approaches for this data. It outputs suggestions
for flagging samples/probes and an easily sharable html quality
control output.

Robert Ziman

NanoStringQCPro

Quality metrics and data processing methods for NanoString mRNA
gene expression data

allSumPlot,RccSet-method function

Plot the sum of all counts (endogenous and housekeeping genes only) for each
sample in an RccSet object.

allSumPlot,RccSet-method: allSumPlot

Description

Usage

Arguments

Value

Details