bdPlot

bdPlot,RccSet-method

rccSet


Plot the binding density of each sample in an RccSet object.
Samples with a binding density < 0.05 or > 2.25 (thresholds defined by NanoString)
are marked in red (dashed red line indicates threshold).


NanoStringQCPro provides a set of quality metrics that can
be used to assess the quality of NanoString mRNA gene
expression data -- i.e. to identify outlier probes and outlier
samples. It also provides different background subtraction and
normalization approaches for this data. It outputs suggestions
for flagging samples/probes and an easily sharable html quality
control output.

Robert Ziman

NanoStringQCPro

Quality metrics and data processing methods for NanoString mRNA
gene expression data

bdPlot,RccSet-method function

Plot the binding density of each sample in an RccSet object.
Samples with a binding density < 0.05 or > 2.25 (thresholds defined by NanoString)
are marked in red (dashed red line indicates threshold).

bdPlot,RccSet-method: Binding density plot

Description

Usage

Arguments

Value