densityPlot

One of the matrices from the assayData() of an RccSet object (make sure
to set the log.transform parameter accordingly)

log.transform

pdata

character; colname in pData() that can be used to label genes by a category of interest (passed on to colByCovar)

covar


Plot the density of counts for all endogenous and housekeeping genes for each sample in an RccSet object


NanoStringQCPro provides a set of quality metrics that can
be used to assess the quality of NanoString mRNA gene
expression data -- i.e. to identify outlier probes and outlier
samples. It also provides different background subtraction and
normalization approaches for this data. It outputs suggestions
for flagging samples/probes and an easily sharable html quality
control output.

Robert Ziman

NanoStringQCPro

Quality metrics and data processing methods for NanoString mRNA
gene expression data

densityPlot function

Plot the density of counts for all endogenous and housekeeping genes for each sample in an RccSet object

densityPlot: densityPlot

Description

Usage

Arguments

Value