fovPlot

fovPlot,RccSet-method

rccSet


Plot the fraction of successfully imaged fields of view (FOV) in the given RccSet.
The RccSet's phenoData should have 'FovCount' and 'FovCounted' columns populated with the total
and successfully imaged FOV counts, respectively. Samples with a FOV counted/FOV count of less than
80


NanoStringQCPro provides a set of quality metrics that can
be used to assess the quality of NanoString mRNA gene
expression data -- i.e. to identify outlier probes and outlier
samples. It also provides different background subtraction and
normalization approaches for this data. It outputs suggestions
for flagging samples/probes and an easily sharable html quality
control output.

Robert Ziman

NanoStringQCPro

Quality metrics and data processing methods for NanoString mRNA
gene expression data

fovPlot,RccSet-method function

Plot the fraction of successfully imaged fields of view (FOV) in the given RccSet.
The RccSet's phenoData should have 'FovCount' and 'FovCounted' columns populated with the total
and successfully imaged FOV counts, respectively. Samples with a FOV counted/FOV count of less than
80

fovPlot,RccSet-method: Fields of view (FOV) plot

Description

Usage

Arguments

Value