getSpikeInInput

Character vector with code classes for each probe.

CodeClass

Character vector with gene names/symbols for each probe.

GeneName

Value to assign as the spike-in input for the non-control probes.

nonCtrlProbeVal


Gets the RNA &#147;spike-in&#148; input levels for positive and negative control probes from the label in their GeneName.
Note that this is a helper function for readRlf() and elsewhere and is not intended for external use.


NanoStringQCPro provides a set of quality metrics that can
be used to assess the quality of NanoString mRNA gene
expression data -- i.e. to identify outlier probes and outlier
samples. It also provides different background subtraction and
normalization approaches for this data. It outputs suggestions
for flagging samples/probes and an easily sharable html quality
control output.

Robert Ziman

NanoStringQCPro

Quality metrics and data processing methods for NanoString mRNA
gene expression data

getSpikeInInput function

Gets the RNA <dQuote>spike-in</dQuote> input levels for positive and negative control probes from the label in their GeneName.
Note that this is a helper function for readRlf() and elsewhere and is not intended for external use.

getSpikeInInput: getSpikeInInput

Description

Usage

Arguments

Value