lodAssess

lodAssess,RccSet-method

rccSet


Assess how many genes in each sample in an RccSet object are below the
limit of detection. (The current implementation does a straightforward
column sum on the presence/absence matrix (paData) in assayData.)


NanoStringQCPro provides a set of quality metrics that can
be used to assess the quality of NanoString mRNA gene
expression data -- i.e. to identify outlier probes and outlier
samples. It also provides different background subtraction and
normalization approaches for this data. It outputs suggestions
for flagging samples/probes and an easily sharable html quality
control output.

Robert Ziman

NanoStringQCPro

Quality metrics and data processing methods for NanoString mRNA
gene expression data

lodAssess,RccSet-method function

Assess how many genes in each sample in an RccSet object are below the
limit of detection. (The current implementation does a straightforward
column sum on the presence/absence matrix (paData) in assayData.)

lodAssess,RccSet-method: lodAssess

Description

Usage

Arguments

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