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NanoStringQCPro (version 1.4.0)

posSumVsAllSumPlot,RccSet-method: posSumVsAllSumPlot

Description

Plot the ratio of sums of positive control counts to all counts for all samples in an RccSet object.

Usage

"posSumVsAllSumPlot"(rccSet, method = c("cutoffByMMAD", "cutoffByVar"), stringency = 4)

Arguments

rccSet
An RccSet object
method
Character string specifying the method for outlier detection: either "cutoffByMMAD" or "cutoffByVar".
stringency
Numeric value passed to the cutoff function specified by the method argument (see the 'd' argument of cutoffByMMAD and cutoffByVar). (If the median ratio is less than 1, three times this value will be used.)

Value

A plot

Details

The ratio for each sample in the RccSet is plotted and and outliers (as determined by the cutoff function specified by the method argument) are marked in red (thresholds for outlier definition are plotted as red dashed lines).