NetPathMiner (version 1.8.0)

NPMdefaults: Default values for NetPathMiner

Description

This function gets a NetPathMiner default value for a variable.

Usage

NPMdefaults(value)

Arguments

value

a character string indicating the variable name.

Value

The defuult value for the given variable.

Details

NetPathMiner defines the following defaults:

• small.comp.ls Dataframe of ubiquitous metabolites. Used by rmSmallCompounds.
• bridge Dataframe of attributes supported by Brigde Database. Used by fetchAttribute.
• bridge.organisms A list of bridge supported organisms. Used by fetchAttribute.
• bridge.web The base URL for Brigde Database webservices. Used by fetchAttribute.

Examples

# Get the default list of small compounds (uniquitous metabolites).
 NPMdefaults("small.comp.ls")