NetPathMiner

NetPathMiner-package


NetPathMiner implements a flexible module-based process flow for network path mining and visualization,
which can be fully inte-grated with user-customized functions.
NetPathMiner supports construction of various types of genome scale networks from KGML, SBML and BioPAX
formats, enabling its utility to most common pathway databases.
NetPathMiner also provides different visualization techniques to facilitate the analysis of even
thousands of output paths.


NetPathMiner is a general framework for network path
mining using genome-scale networks. It constructs networks from
KGML, SBML and BioPAX files, providing three network
representations, metabolic, reaction and gene representations.
NetPathMiner finds active paths and applies machine learning
methods to summarize found paths for easy interpretation. It
also provides static and interactive visualizations of networks
and paths to aid manual investigation.

Ahmed Mohamed

NetPathMiner for Biological Network Construction, Path Mining
and Visualization

NetPathMiner-package function

NetPathMiner implements a flexible module-based process flow for network path mining and visualization,
which can be fully inte-grated with user-customized functions.
NetPathMiner supports construction of various types of genome scale networks from KGML, SBML and BioPAX
formats, enabling its utility to most common pathway databases.
NetPathMiner also provides different visualization techniques to facilitate the analysis of even
thousands of output paths.

NetPathMiner-package: General framework for network extraction, path mining.

Description

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