ex_biopax


A dataset containing Porphyrin metabolism pathway in Biopax Level 3 and parsed with
<code><a rd-options="rBiopaxParser" href="/link/readBiopax?package=NetPathMiner&version=1.8.0&to=rBiopaxParser" data-mini-rdoc="rBiopaxParser::readBiopax">readBiopax</a></code>.


NetPathMiner is a general framework for network path
mining using genome-scale networks. It constructs networks from
KGML, SBML and BioPAX files, providing three network
representations, metabolic, reaction and gene representations.
NetPathMiner finds active paths and applies machine learning
methods to summarize found paths for easy interpretation. It
also provides static and interactive visualizations of networks
and paths to aid manual investigation.

Ahmed Mohamed

NetPathMiner

NetPathMiner for Biological Network Construction, Path Mining
and Visualization

ex_biopax function

A dataset containing Porphyrin metabolism pathway in Biopax Level 3 and parsed with
<code><a href="readBiopax" rd-options="rBiopaxParser">readBiopax</a></code>.

ex_biopax: Biopax example data

Description

Arguments

Examples