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NetRep (version 1.2.7)
Permutation Testing Network Module Preservation Across Datasets
Description
Functions for assessing the replication/preservation of a network module's topology across datasets through permutation testing; Ritchie et al. (2015)
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1.2.7
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Install
install.packages('NetRep')
Monthly Downloads
453
Version
1.2.7
License
GPL-2
Maintainer
Scott Ritchie
Last Published
August 19th, 2023
Functions in NetRep (1.2.7)
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orderModules_param
Template parameters
common_params
Template parameters
disk.matrix
The 'disk.matrix' class
example-data
Example data
modulePreservation
Replication and preservation of network modules across datasets
networkProperties
Calculate the topological properties for a network module
simplify_param
Template parameters
permutationTest
Permutation test P-values for module preservation statistics
NetRep
Fast permutation procedure for testing network module replication
requiredPerms
How many permutations do I need to test at my desired significance level?
load.bigMatrix
Load a 'bigMatrix' (deprecated)
plotTopology
Plot a topological feature of network module
sampleOrder
Order samples within a network.
plot_params
Template parameters
plotModule
Plot the topology of a network module
combineAnalyses
Combine results of multiple permutation procedures
nodeOrder
Order nodes in descending order of
weighted degree
and order modules by the similarity of their summary vectors.