Usage
processInput(discovery, test, network, correlation, data, moduleAssignments, modules, backgroundLabel, verbose, funcType, orderNodesBy = NA, orderSamplesBy = NA, orderModules = NULL)
Arguments
discovery
user input for the 'discovery' argument.
test
user input for the 'test' argument.
network
user input for the 'network' argument.
correlation
user input for the 'correlation' argument.
data
user input for the 'data' argument.
moduleAssignments
user input for the 'moduleAssignments' argument.
modules
user input for the 'modules' argument.
backgroundLabel
user input for the 'backgroundLabel' argument.
verbose
logical; should progress be reported? Default is TRUE.
funcType
one of "preservation", "properties" or "plot".
orderNodesBy
user input for the 'orderNodesBy' argument in the
plotting functions.
orderSamplesBy
user input for the 'orderSamplesBy' argument in the
plotting functions.
orderModules
user input for the 'orderModules' argument in the
plotting functions.