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NetRep (version 1.2.7)

Permutation Testing Network Module Preservation Across Datasets

Description

Functions for assessing the replication/preservation of a network module's topology across datasets through permutation testing; Ritchie et al. (2015) .

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Version

Install

install.packages('NetRep')

Monthly Downloads

503

Version

1.2.7

License

GPL-2

Maintainer

Scott Ritchie

Last Published

August 19th, 2023

Functions in NetRep (1.2.7)

orderModules_param

Template parameters
common_params

Template parameters
disk.matrix

The 'disk.matrix' class
example-data

Example data
modulePreservation

Replication and preservation of network modules across datasets
networkProperties

Calculate the topological properties for a network module
simplify_param

Template parameters
permutationTest

Permutation test P-values for module preservation statistics
NetRep

Fast permutation procedure for testing network module replication
requiredPerms

How many permutations do I need to test at my desired significance level?
load.bigMatrix

Load a 'bigMatrix' (deprecated)
plotTopology

Plot a topological feature of network module
sampleOrder

Order samples within a network.
plot_params

Template parameters
plotModule

Plot the topology of a network module
combineAnalyses

Combine results of multiple permutation procedures
nodeOrder

Order nodes in descending order of weighted degree and order modules by the similarity of their summary vectors.