NetworkToolbox (version 1.1.2)

bootgenPlot: Bootstrapped Network Generalization Plots

Description

Generates reliability plots from the bootgen function

Usage

bootgenPlot(object, bootmat = FALSE, breaks = 20)

Arguments

object

An output from the bootgen function

bootmat

Should the bootstrap generalization matrix be included? Defaults to FALSE. Set to TRUE to plot the original and bootmat networks' reliablities

breaks

If bootmat = TRUE, then reliability comparison histogram is produced. The breaks may not appear as desired, so the researcher can adjust as needed. Defaults to 20 (try 10 if 20 isn't equivalent breaks)

Value

Returns the following plots: a reliability matrix for the original network ("Original Network Correlation Reliabilities" upper triangle = network reliabilites from the filtered network, lower triangle = full, unfiltered matrix reliablities), a plot of retained correlations on their reliability ("Original Network Correlation Strength on Reliability"), If bootmat is set to TRUE, then also a reliability matrix for the bootgen network ("bootgen Network Correlation Reliabilities" upper triangle = network reliabilites from the bootgen filtered network, lower triangle = full, unfiltered matrix reliablities), a plot of retained correlations on their reliability ("bootgen Network Correlation Strength on Reliability"), a frequency of the reliability of edges in both the original and bootgen network

References

Wei, T. & Simko, V.(2017). R package "corrplot": Visualization of a correlation matrix (Version 0.84). Available from https://github.com/taiyun/corrplot

Examples

# NOT RUN {
bootTMFG <- bootgen(neoOpen)

bootPlot <- bootPlot(bootTMFG)
# }