RDocumentation
Moon
Learn R
Search all packages and functions
NormqPCR (version 1.18.0)
Functions for normalisation of RT-qPCR data
Description
Functions for the selection of optimal reference genes and the normalisation of real-time quantitative PCR data.
Copy Link
Copy
Link to current version
Version
Version
1.18.0
1.16.0
1.14.0
1.12.0
Down Chevron
Version
1.18.0
License
LGPL-3
Maintainer
James Perkins
Last Published
October 6th, 2014
Functions in NormqPCR (1.18.0)
Search functions
Colon
Colon dataset of Andersen et al (2004)
BladderRepro
Dataset of Andersen et al (2004)
geNorm
Data set of Vandesompele et al (2002)
stabMeasureRho
Gene expression stability value rho
deltaDeltaCt
Perform normalization and differential expression with given housekeeping gene
Bladder
Bladder dataset of Andersen et al (2004)
combineTechReps
Combines Technical Replicates
deltaCt
Perform normalization with a given housekeeping gene
CqValues
Compute Cq value and amplification efficiency
ComputeNRQs
Compute Normalized Relative Quantities
combineTechRepsWithSD
Combines Technical Replicates
makeAllNewVal
Make all Cq values NA
geomMean
Geometric Mean
replaceNAs
Replace NAs with a given value
replaceAboveCutOff
Replace Cq values with new value
NormqPCR-package
Functions for normalisation of RT-qPCR data.
selectHKs
Selection of reference/housekeeping genes
makeAllNAs
Make all Cq values NA
stabMeasureM
Gene expression stability value M