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Ordered Homogeneity Pursuit Lasso

Introduction

Implements the ordered homogeneity pursuit lasso (OHPL) algorithm for group variable selection proposed in Lin et al. (2017) <DOI:10.1016/j.chemolab.2017.07.004> (PDF). The OHPL method exploits the homogeneity structure in high-dimensional data and enjoys the grouping effect to select groups of important variables automatically. This feature makes it particularly useful for high-dimensional datasets with strongly correlated variables, such as spectroscopic data.

Paper citation

Formatted citation:

You-Wu Lin, Nan Xiao, Li-Li Wang, Chuan-Quan Li, and Qing-Song Xu (2017). Ordered homogeneity pursuit lasso for group variable selection with applications to spectroscopic data. Chemometrics and Intelligent Laboratory Systems 168, 62-71.

BibTeX entry:

@article{lin2017ordered,
  title   = {Ordered homogeneity pursuit lasso for group variable selection with applications to spectroscopic data},
  author  = {You-Wu Lin and Nan Xiao and Li-Li Wang and Chuan-Quan Li and Qing-Song Xu},
  journal = {Chemometrics and Intelligent Laboratory Systems},
  year    = {2017},
  volume  = {168},
  pages   = {62--71},
  doi     = {10.1016/j.chemolab.2017.07.004}
}

Installation

You can install OHPL from CRAN:

install.packages("OHPL")

Or try the development version on GitHub:

# install.packages("remotes")
remotes::install_github("nanxstats/OHPL")

To get started, try the examples in OHPL():

library("OHPL")
?OHPL

Browse the package documentation for more information.

Contribute

To contribute to this project, please take a look at the Contributing Guidelines first. Please note that the OHPL project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

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Version

Install

install.packages('OHPL')

Monthly Downloads

240

Version

1.4.1

License

GPL-3 | file LICENSE

Issues

Pull Requests

Stars

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Maintainer

Nan Xiao

Last Published

July 20th, 2024

Functions in OHPL (1.4.1)

dlc

Compute D, L, and C in the Fisher optimal partitions algorithm
cv.OHPL

Cross-validation for Ordered Homogeneity Pursuit Lasso
FOP

Fisher optimal partition
OHPL

Ordered Homogeneity Pursuit Lasso
OHPL.RMSEP

Compute RMSEP, MAE, and Q2 for a test set
OHPL-package

OHPL: Ordered Homogeneity Pursuit Lasso for Group Variable Selection
soil

The soil dataset
wheat

The wheat dataset
proto

Extract the prototype from each variable group
predict.OHPL

Make predictions based on the fitted OHPL model
OHPL.sim

Generate simulation data for benchmarking sparse regressions (Gaussian response)
beer

The beer dataset