extract_chip_id

This function retrieves chip values from file names matching a specific pattern.

Clinical reports generated by 'Oncomine Reporter' software contain
critical data in unstructured PDF format, making manual extraction
time-consuming and error-prone. 'ORscraper' provides a coherent suite of
functions to automate this process, allowing researchers to parse
reports, identify key biomarkers, extract genetic variant tables,
and filter results. It also integrates with the NCBI 'ClinVar' API
<https://www.ncbi.nlm.nih.gov/clinvar/> to enrich extracted data.

Samuel González

ORscraper

Extract Information from Clinical Reports from 'Oncomine
Reporter' and NCBI 'ClinVar'

Antonio Jesus Canepa

Patricia Saiz

María González

extract_chip_id function

<dl><dt>files</dt>
<dd>Character vector. File names to process.</dd></dl>

Arguments

Extract numeric identifiers from file names — extract_chip_id

<dl>

<dt>files</dt>
<dd>Character vector. File names to process.</dd>

</dl>

extract_chip_id: Extract numeric identifiers from file names

Description

Usage

Value

Arguments

Examples