read_pdf_files

This function scans a specified directory and retrieves all files with a .pdf extension.

Clinical reports generated by 'Oncomine Reporter' software contain
critical data in unstructured PDF format, making manual extraction
time-consuming and error-prone. 'ORscraper' provides a coherent suite of
functions to automate this process, allowing researchers to parse
reports, identify key biomarkers, extract genetic variant tables,
and filter results. It also integrates with the NCBI 'ClinVar' API
<https://www.ncbi.nlm.nih.gov/clinvar/> to enrich extracted data.

Samuel González

ORscraper

Extract Information from Clinical Reports from 'Oncomine
Reporter' and NCBI 'ClinVar'

Antonio Jesus Canepa

Patricia Saiz

María González

read_pdf_files function

<dl><dt>path</dt>
<dd>Character. Path to the directory to scan for PDF files.</dd></dl>

Arguments

Read all PDF files in a directory — read_pdf_files

<dl>

<dt>path</dt>
<dd>Character. Path to the directory to scan for PDF files.</dd>

</dl>

read_pdf_files: Read all PDF files in a directory

Description

Usage

Value

Arguments

Examples