OSAT (version 1.20.0)

MSAroboticPlate-class: Class "MSAroboticPlate"

Description

A class store layout information of MSA robotic loader plate.

Extends

Class "gArray", directly.

Predefined objects

MSA4.plate: A predeined object of class MSAroboticPlate that represent a 96 position plate. BeadChip96ToMSA4MAPMap: The loading order a MSA4 robotic loader used to load BeadChips.

See Also

gExperimentSetup

Examples

library("OSAT")
# data as an example
inPath <- system.file("extdata", package="OSAT")
pheno <- read.table(file.path(inPath, 'samples.txt'), header=TRUE, sep="t")

## create object to hold sample information
gs <- setup.sample(pheno,  optimal=c("SampleType", "Race", "AgeGrp"), strata=c("SampleType") )
gs

gc <- setup.container(IlluminaBeadChip96Plate, 6, batch='plates')
gc

gSetup <- create.optimized.setup(sample=gs, container=gc, nSim=100)
out <- map.to.MSA(gSetup, MSA4.plate)