vis_pollen

A dataset containing the visualization coordinates and the true cluster labels of 301 cells.

datasets

Providing mean partition for ensemble clustering by optimal transport alignment(OTA), uncertainty measures for both partition-wise and cluster-wise assessment and multiple visualization functions to show uncertainty, for instance, membership heat map and plot of covering point set. A partition refers to an overall clustering result. Jia Li, Beomseok Seo, and Lin Lin (2019) <doi:10.1002/sam.11418>. Lixiang Zhang, Lin Lin, and Jia Li (2020) <doi:10.1093/bioinformatics/btaa165>.

Lixiang Zhang

OTclust

Mean Partition, Uncertainty Assessment, Cluster Validation and
Visualization Selection for Cluster Analysis

Beomseok Seo

Lin Lin

Jia Li

vis_pollen function

A list containing two components<dl>
 <dt>vis</dt>
<dd>visualization coordinates of cells</dd> <dt>ref</dt>
<dd>true labels of cells</dd>
</dl>

Format

Single cell gene visualization data from Pollen's paper — vis_pollen

A list containing two components<dl>
 <dt>vis</dt>
<dd>visualization coordinates of cells</dd>

 <dt>ref</dt>
<dd>true labels of cells</dd>


</dl>

vis_pollen: Single cell gene visualization data from Pollen's paper

Description

Usage

Arguments

Format