OhdsiReportGenerator (version 2.0.2)

getCmTable: Extract the cohort method table specified

Description

This function extracts the specific cohort method table.

Usage

getCmTable(
  connectionHandler,
  schema,
  table = c("attrition", "follow_up_dist", "interaction_result", "covariate_balance",
    "kaplan_meier_dist", "likelihood_profile", "preference_score_dist",
    "propensity_model", "shared_covariate_balance")[1],
  cmTablePrefix = "cm_",
  cgTablePrefix = "cg_",
  databaseTable = "database_meta_data",
  targetIds = NULL,
  outcomeIds = NULL,
  comparatorIds = NULL,
  analysisIds = NULL,
  databaseIds = NULL
)

Value

Returns a data.frame with the cohort method requested table

Arguments

connectionHandler

A connection handler that connects to the database and extracts sql queries. Create a connection handler via `ResultModelManager::ConnectionHandler$new()`.

schema

The result database schema (e.g., 'main' for sqlite)

table

The result table to extract

cmTablePrefix

The prefix used for the cohort method results tables

cgTablePrefix

The prefix used for the cohort generator results tables

databaseTable

The name of the table with the database details (default 'database_meta_data')

targetIds

A vector of integers corresponding to the target cohort IDs

outcomeIds

A vector of integers corresponding to the outcome cohort IDs

comparatorIds

A vector of integers corresponding to the comparator cohort IDs

analysisIds

the analysis IDs to restrict to

databaseIds

the database IDs to restrict to

Details

Specify the connectionHandler, the schema and optionally the target/comparator/outcome/analysis/database IDs

See Also

Other Estimation: getCMEstimation(), getCmDiagnosticsData(), getCmMetaEstimation(), getCmNegativeControlEstimates(), getCmOutcomes(), getCmPropensityModel(), getCmTargets(), getSccsDiagnosticsData(), getSccsEstimation(), getSccsMetaEstimation(), getSccsModel(), getSccsNegativeControlEstimates(), getSccsOutcomes(), getSccsTable(), getSccsTargets(), getSccsTimeToEvent(), plotCmEstimates(), plotSccsEstimates()

Examples

conDet <- getExampleConnectionDetails()

connectionHandler <- ResultModelManager::ConnectionHandler$new(conDet)

cmTable <- getCmTable(
  connectionHandler = connectionHandler, 
  schema = 'main',
  table = 'attrition'
)