getIncidenceOutcomes: A function to extract the outcomes found in incidence

Description

A function to extract the outcomes found in incidence

Usage

getIncidenceOutcomes(
  connectionHandler,
  schema,
  ciTablePrefix = "ci_",
  cgTablePrefix = "cg_",
  targetId = NULL
)

Value

A data.frame with the incidence outcome cohort ids and names

Arguments

connectionHandler: A connection handler that connects to the database and extracts sql queries. Create a connection handler via `ResultModelManager::ConnectionHandler$new()`.
schema: The result database schema (e.g., 'main' for sqlite)
ciTablePrefix: The prefix used for the cohort incidence results tables
cgTablePrefix: The prefix used for the cohort generator results tables
targetId: An integer corresponding to the target cohort ID

Details

Specify the connectionHandler, the schema and the prefixes

Other Characterization: getBinaryCaseSeries(), getBinaryRiskFactors(), getCaseBinaryFeatures(), getCaseContinuousFeatures(), getCaseCounts(), getCaseTargetBinaryFeatures(), getCaseTargetCounts(), getCharacterizationCohortBinary(), getCharacterizationCohortContinuous(), getCharacterizationDemographics(), getCharacterizationOutcomes(), getCharacterizationTargets(), getContinuousCaseSeries(), getContinuousRiskFactors(), getDechallengeRechallenge(), getDechallengeRechallengeFails(), getIncidenceRates(), getIncidenceTargets(), getTargetBinaryFeatures(), getTargetContinuousFeatures(), getTimeToEvent(), plotAgeDistributions(), plotSexDistributions()

Examples

Run this code

conDet <- getExampleConnectionDetails()

connectionHandler <- ResultModelManager::ConnectionHandler$new(conDet)

outcomes <- getIncidenceOutcomes(
  connectionHandler = connectionHandler, 
  schema = 'main'
)