olink_lod

Calculate LOD using Negative Controls or Fixed LOD

A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.

Kathleen Nevola

OlinkAnalyze

Facilitate Analysis of Proteomic Data from Olink

Marianne Sandin

Jamey Guess

Simon Forsberg

Christoffer Cambronero

Pascal Pucholt

Boxi Zhang

Masoumeh Sheikhi

Klev Diamanti

Amrita Kar

Lei Conze

Kristyn Chin

Kristian Hodén

Per Eriksson

Nicola Moloney

Britta Lötstedt

Emmett Sprecher

Jessica Barbagallo

Olof Mansson

Ola Caster

Danai Topouza

Olink 

olink_lod function

<dl><dt>data</dt>
<dd>npx data file</dd>
<dt>lod_file_path</dt>
<dd>location of lod file from Olink. Only needed if
lod_method = "FixedLOD". Default `NULL`.</dd>
<dt>lod_method</dt>
<dd>method for calculating LOD using either "FixedLOD" or
negative controls ("NCLOD"). Default `NCLOD`.</dd></dl>

Arguments

Calculate LOD using Negative Controls or Fixed LOD — olink_lod

<dl>

<dt>data</dt>
<dd>npx data file</dd>


<dt>lod_file_path</dt>
<dd>location of lod file from Olink. Only needed if
lod_method = "FixedLOD". Default `NULL`.</dd>


<dt>lod_method</dt>
<dd>method for calculating LOD using either "FixedLOD" or
negative controls ("NCLOD"). Default `NCLOD`.</dd>

</dl>

Calculate LOD using Negative Controls or Fixed LOD

olink_lod: Calculate LOD using Negative Controls or Fixed LOD

Description

Usage

Value

Arguments