olink_norm_input_assay_overlap

Check <var>datasets</var> and <var>reference_medians</var> for Olink identifiers not
shared across datasets.

A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.

Kathleen Nevola

OlinkAnalyze

Facilitate Analysis of Proteomic Data from Olink

Marianne Sandin

Jamey Guess

Simon Forsberg

Christoffer Cambronero

Pascal Pucholt

Boxi Zhang

Masoumeh Sheikhi

Klev Diamanti

Amrita Kar

Lei Conze

Kristyn Chin

Danai Topouza

Kristian Hodén

Per Eriksson

Nicola Moloney

Britta Lötstedt

Emmett Sprecher

Jessica Barbagallo

Olof Mansson

Ola Caster

Olink 

olink_norm_input_assay_overlap function

<dl><dt>lst_df</dt>
<dd>Named list of datasets to be normalized.</dd>
<dt>reference_medians</dt>
<dd>Dataset with columns "OlinkID" and "Reference_NPX".
Used for reference median normalization.</dd>
<dt>lst_cols</dt>
<dd>Named list of vectors with the required column names for each
dataset in <var>lst_df</var>.</dd></dl>

Arguments

Author

Check datasets and reference_medians for Olink identifiers not
shared across datasets. — olink_norm_input_assay_overlap

<dl>

<dt>lst_df</dt>
<dd>Named list of datasets to be normalized.</dd>


<dt>reference_medians</dt>
<dd>Dataset with columns "OlinkID" and "Reference_NPX".
Used for reference median normalization.</dd>


<dt>lst_cols</dt>
<dd>Named list of vectors with the required column names for each
dataset in <var>lst_df</var>.</dd>

</dl>

Check <var>datasets</var> and <var>reference_medians</var> for Olink identifiers not
shared across datasets.

olink_norm_input_assay_overlap: Check `datasets` and `reference_medians` for Olink identifiers not shared across datasets.

Description

Usage

Value

Arguments

Author