olink_format_rm_ext_ctrl

Remove negative controls and plate controls from dataset. For use in
olink_normalization_format function. Generates a message stating which
control samples were removed.

A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.

Kathleen Nevola

OlinkAnalyze

Facilitate Analysis of Proteomic Data from Olink

Marianne Sandin

Jamey Guess

Simon Forsberg

Christoffer Cambronero

Pascal Pucholt

Boxi Zhang

Masoumeh Sheikhi

Klev Diamanti

Amrita Kar

Lei Conze

Kristyn Chin

Danai Topouza

Stephen Pollo

Kang Dong

Kristian Hodén

Per Eriksson

Nicola Moloney

Britta Lötstedt

Emmett Sprecher

Jessica Barbagallo

Olof Mansson

Ola Caster

Olink 

olink_format_rm_ext_ctrl function

<dl><dt>df</dt>
<dd>NPX dataset to be processed.</dd>
<dt>lst_check</dt>
<dd>Normalization input list checks generated by
<code>olink_norm_input_check</code>.</dd></dl>

Arguments

Author

Remove negative controls and plate controls from dataset. For use in
olink_normalization_format function. Generates a message stating which
control samples were removed. — olink_format_rm_ext_ctrl

<dl>

<dt>df</dt>
<dd>NPX dataset to be processed.</dd>


<dt>lst_check</dt>
<dd>Normalization input list checks generated by
<code>olink_norm_input_check</code>.</dd>

</dl>

Remove negative controls and plate controls from dataset. For use in
olink_normalization_format function. Generates a message stating which
control samples were removed.

olink_format_rm_ext_ctrl: Remove negative controls and plate controls from dataset. For use in olink_normalization_format function. Generates a message stating which control samples were removed.

Description

Usage

Value

Arguments

Author