read_npx_delim

read_npx_csv

The function can handle delimited files in long and wide format.

internal

A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.

Kathleen Nevola

OlinkAnalyze

Facilitate Analysis of Proteomic Data from Olink

Marianne Sandin

Jamey Guess

Simon Forsberg

Christoffer Cambronero

Pascal Pucholt

Boxi Zhang

Masoumeh Sheikhi

Klev Diamanti

Amrita Kar

Lei Conze

Kristyn Chin

Danai Topouza

Stephen Pollo

Kang Dong

Kristian Hodén

Per Eriksson

Nicola Moloney

Britta Lötstedt

Emmett Sprecher

Jessica Barbagallo

Olof Mansson

Ola Caster

Olink 

read_npx_delim function

<dl><dt>file</dt>
<dd>Path to Olink software output delimited file in wide or long
format. Expecting file extensions
"csv" or "txt".</dd>
<dt>out_df</dt>
<dd>The class of the output dataset. One of
"tibble" or "arrow". Defaults to
"tibble".</dd></dl>

Arguments

Klev Diamanti
Christoffer Cambronero
Kathleen Nevola

Author

Help function to read long or wide format
"Ct", "NPX", or "Quantified" data from
delimited
"csv" or "txt"
files exported from Olink software in R. — read_npx_delim

<dl>

<dt>file</dt>
<dd>Path to Olink software output delimited file in wide or long
format. Expecting file extensions
"csv" or "txt".</dd>


<dt>out_df</dt>
<dd>The class of the output dataset. One of
"tibble" or "arrow". Defaults to
"tibble".</dd>

</dl>

Help function to read long or wide format
"Ct", "NPX", or "Quantified" data from
delimited
"csv" or "txt"
files exported from Olink software in R.

read_npx_delim: Help function to read long or wide format "Ct", "NPX", or "Quantified" data from delimited "csv" or "txt" files exported from Olink software in R.

Description

Usage

Value

Arguments

Author

See Also