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OmicCircos (version 1.10.0)

High-quality circular visualization of omics data

Description

OmicCircos is an R application and package for generating high-quality circular plots for omics data.

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Version

Version

1.10.0

License

GPL-2

Maintainer

Ying Hu

Last Published

February 15th, 2017

Functions in OmicCircos (1.10.0)

TCGA.BC_Her2_cnv_exp

TCGA BRCA expression and cnv association
UCSC.hg19.chr

human hg19 segment data
segAnglePo

generate circular skeleton data from user's mapping data
TCGA.BC.cnv.2k.60

copy number data of TCGA Breast Cancer
TCGA.PAM50_genefu_hg18

BRCA PAM50 gene list (hg18)
sim.circos

circular data simulation
TCGA.BC.fus

TCGA Breast Cancer gene fusion data.
circos

draw circular
UCSC.mm10.chr

mouse mm10 segment data.
UCSC.mm9.chr

mouse mm9 segment data.
segAnglePo-methods

~~ Methods for Function segAnglePo ~~
UCSC.mm9

mouse mm9 circumference coordinates
UCSC.mm10

mouse mm10 circumference coordinates
UCSC.hg18.chr

human hg18 segment data.
OmicCircos-package

OmicCircos package
TCGA.BC.gene.exp.2k.60

TCGA BRCA expression data
UCSC.hg19

human hg19 circumference coordinates
UCSC.chr.colors

chromosome banding colors
TCGA.BC.sample60

TCGA BRCA Sample names and subtypes
UCSC.hg18

human hg18 circumference coordinates