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OmicCircos (version 1.10.0)
High-quality circular visualization of omics data
Description
OmicCircos is an R application and package for generating high-quality circular plots for omics data.
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Version
Version
1.10.0
1.8.0
1.6.0
1.4.0
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Version
1.10.0
License
GPL-2
Maintainer
Ying Hu
Last Published
February 23rd, 2015
Functions in OmicCircos (1.10.0)
Search functions
TCGA.BC_Her2_cnv_exp
TCGA BRCA expression and cnv association
UCSC.hg19.chr
human hg19 segment data
segAnglePo
generate circular skeleton data from user's mapping data
TCGA.BC.cnv.2k.60
copy number data of TCGA Breast Cancer
TCGA.PAM50_genefu_hg18
BRCA PAM50 gene list (hg18)
sim.circos
circular data simulation
TCGA.BC.fus
TCGA Breast Cancer gene fusion data.
circos
draw circular
UCSC.mm10.chr
mouse mm10 segment data.
UCSC.mm9.chr
mouse mm9 segment data.
segAnglePo-methods
~~ Methods for Function
segAnglePo
~~
UCSC.mm9
mouse mm9 circumference coordinates
UCSC.mm10
mouse mm10 circumference coordinates
UCSC.hg18.chr
human hg18 segment data.
OmicCircos-package
OmicCircos package
TCGA.BC.gene.exp.2k.60
TCGA BRCA expression data
UCSC.hg19
human hg19 circumference coordinates
UCSC.chr.colors
chromosome banding colors
TCGA.BC.sample60
TCGA BRCA Sample names and subtypes
UCSC.hg18
human hg18 circumference coordinates