read_rarefraction_qiime

Parses a QIIME2 table of rarefied data into a data.table as input to diversity_plot

A generalised data structure for fast and efficient loading and data munching of sparse omics data. The 'OmicFlow' requires an up-front validated metadata template from the user,
which serves as a guide to connect all the pieces together by aligning them into a single object that is defined as an 'omics' class.
Once this unified structure is established, users can perform manual subsetting, visualisation, and statistical analysis, or leverage the automated 'autoFlow' method to generate a comprehensive report.

Alem Gusinac

OmicFlow

Fast and Efficient (Automated) Analysis of Sparse Omics Data

Thomas Ederveen

Annemarie Boleij

read_rarefraction_qiime function

<dl><dt>filepath</dt>
<dd>A character value, filename or filepath to existing file.</dd></dl>

Arguments

Loads a rarefied alpha diversity table from Qiime2 — read_rarefraction_qiime

<dl>

<dt>filepath</dt>
<dd>A character value, filename or filepath to existing file.</dd>

</dl>

read_rarefraction_qiime: Loads a rarefied alpha diversity table from Qiime2

Description

Usage

Value

Arguments