sparse_to_dtable

Wrapper function that converts a sparseMatrix to data.table

A generalised data structure for fast and efficient loading and data munching of sparse omics data. The 'OmicFlow' requires an up-front validated metadata template from the user,
which serves as a guide to connect all the pieces together by aligning them into a single object that is defined as an 'omics' class.
Once this unified structure is established, users can perform manual subsetting, visualisation, and statistical analysis, or leverage the automated 'autoFlow' method to generate a comprehensive report.

Alem Gusinac

OmicFlow

Fast and Efficient (Automated) Analysis of Sparse Omics Data

Thomas Ederveen

Annemarie Boleij

sparse_to_dtable function

<dl><dt>sparsemat</dt>
<dd>A <a href="/link/sparseMatrix?package=OmicFlow&version=1.4.2" data-mini-rdoc="OmicFlow::sparseMatrix">sparseMatrix</a> class.</dd></dl>

Arguments

Converting a sparse matrix to data.table — sparse_to_dtable

<dl>

<dt>sparsemat</dt>
<dd>A <a href='https://rdrr.io/pkg/Matrix/man/sparseMatrix.html'>sparseMatrix</a> class.</dd>

</dl>

sparse_to_dtable: Converting a sparse matrix to data.table

Description

Usage

Value

Arguments