OmicInt (version 1.1.7)

cluster_heatmap: cluster_heatmap

Description

cluster_heatmap uses information mined from STRING database to map experimental, referenced, and inferred interactions to see if there are any interactors in the set of significantly changed genes. This heatmap provides clustered visualisation of all genes and the genes that have shared interactions.

Usage

cluster_heatmap(data)

Arguments

data

requires a data frame containing gene names as row names and a column with LFC values. Class - data frame

Value

heatmap; class - plot

Examples

# NOT RUN {
 
# }
# NOT RUN {
path_to_test_data<- system.file("extdata", "test_data.tabular", package="OmicInt")
# basic usage of cluster_heatmap
df<-utils::read.table(path_to_test_data)
cluster_heatmap(df)
# }